CSIRO_D5chr03_38752632 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr03_38752632
AliasChr03_38752632
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceCTCAATTGGTGTTCTAAAAATTTCAAGGTCATTTCGATCCAGGTCATTATAGGTTTAGAT CATTTCGAATTCAAATTATTTTGGATTCAGATTATTTTCG
3' Flanking SequenceTTTGGATTTATTCAGGTTTGGATGTTAACTTTTTACAATCAAATTGAATTGGAATGGATT TTGATTCAGGTTGATTGTGTGTCGGGTTTTCAAGTTTGGG
SpeciesGossypium hirsutum
GermplasmSiokra 1-4
MCU-5 (PI 694627)
Source Typerestriction-site associated DNA
RNA-seq and restriction-site associated DNA
Restriction EnzymeEcoRI; ApekI; SbfI
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018217.1chromosomeCM018217.1:45410069..45410269 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:39282473..39282673 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr3chromosomeDt_chr3:18517110..18517310 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:39179357..39179557 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:44896294..44896494 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:46403904..46404104 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:45893460..45893660 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:45200551..45200751 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:43833024..43833224 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:46316233..46316433 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:44673326..44673526 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:48793769..48793969 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:46297672..46297872 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:47154146..47154346 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:41378042..41378242 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Germplasm
Stock NameType
Siokra 1-4accession
MCU-5 (PI 694627)accession
Sequence
>CSIRO_D5chr03_38752632 ID=CSIRO_D5chr03_38752632; Name=CSIRO_D5chr03_38752632; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CTCAATTGGTGTTCTAAAAATTTCAAGGTCATTTCGATCCAGGTCATTAT
AGGTTTAGATCATTTCGAATTCAAATTATTTTGGATTCAGATTATTTTCG
[G/C]TTTGGATTTATTCAGGTTTGGATGTTAACTTTTTACAATCAAATT
GAATTGGAATGGATTTTGATTCAGGTTGATTGTGTGTCGGGTTTTCAAGT
TTGGG