CSIRO_D5chr03_3521677 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr03_3521677
AliasChr03_3521677
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceACCCATTTTTTTTTTAAAAAGTTGTTAATTACCTCAGCAATTATGGTAATGTCAAGTGTT GAATTCCCAAAAGGCAAAGCATTGGTATTAACAATTGAGA
3' Flanking SequenceACGAAGGTTCTCAATTTCGCTTAGTATTTTGGCTATGAAACCTTTGTGTTTCTCGCAATG GATTCGAATAAGGACGTCATTGTCTGAGACTTTAGCTTCG
SpeciesGossypium hirsutum
GermplasmSiokra 1-4
MCU-5 (PI 694627)
Source Typerestriction-site associated DNA
RNA-seq and restriction-site associated DNA
Restriction EnzymeEcoRI; ApekI; SbfI
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018217.1chromosomeCM018217.1:3497027..3497227 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:3541765..3541965 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_02chromosomeD10_02:3377763..3377958 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:25892167..25892367 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:3484679..3484879 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:3538337..3538537 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:3483672..3483872 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:3570128..3570328 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:3578437..3578637 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:3457179..3457379 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:3499791..3499991 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:3463295..3463495 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:3621629..3621830 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:3481672..3481872 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:3674591..3674791 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:3419890..3420090 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:3372238..3372440 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_03chromosomeChr_03:2528382..2528584 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Germplasm
Stock NameType
Siokra 1-4accession
MCU-5 (PI 694627)accession
Sequence
>CSIRO_D5chr03_3521677 ID=CSIRO_D5chr03_3521677; Name=CSIRO_D5chr03_3521677; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
ACCCATTTTTTTTTTAAAAAGTTGTTAATTACCTCAGCAATTATGGTAAT
GTCAAGTGTTGAATTCCCAAAAGGCAAAGCATTGGTATTAACAATTGAGA
[G/C]ACGAAGGTTCTCAATTTCGCTTAGTATTTTGGCTATGAAACCTTT
GTGTTTCTCGCAATGGATTCGAATAAGGACGTCATTGTCTGAGACTTTAG
CTTCG