CSIRO_D5chr02_20163753 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr02_20163753
AliasChr02_20163753
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceTCTTGACATGCATAAGGACATGGGTACGGGAAACACATGCAAGCGAGCTCAAGTGAACAT AGCATGAAAGACAATTCAAGTAACAATGTCATATGATGGT
3' Flanking SequenceATTTAAACCAGTGTTTCAGAATTCTATTACAACCATAATATAGCCTCTGAAAATGGTCAA TAGAGTTGTATTTCATCTTAACTGGTTAACATAGATTACT
SpeciesGossypium hirsutum
GermplasmSiokra 1-4
MCU-5 (PI 694627)
Source Typerestriction-site associated DNA
RNA-seq and restriction-site associated DNA
Restriction EnzymeEcoRI; ApekI; SbfI
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:19051116..19051316 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:18372772..18372971 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:42163916..42164116 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:36383695..36383897 +Gossypium australe (G2) genome CRI_v1.1n/a
D01chromosomeD01:18199933..18200133 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:19494126..19494326 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:19065812..19066012 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:19059779..19059979 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:19413321..19413521 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:19656937..19657137 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:19409903..19410103 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:19367146..19367346 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:20305083..20305283 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:19356490..19356690 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:19769940..19770140 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:19205820..19206020 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:16648987..16649187 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:14247105..14247305 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:18780739..18780939 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:17142828..17143028 +Gossypium aridum (D4) genome ISU_v1n/a
Germplasm
Stock NameType
Siokra 1-4accession
MCU-5 (PI 694627)accession
Sequence
>CSIRO_D5chr02_20163753 ID=CSIRO_D5chr02_20163753; Name=CSIRO_D5chr02_20163753; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
TCTTGACATGCATAAGGACATGGGTACGGGAAACACATGCAAGCGAGCTC
AAGTGAACATAGCATGAAAGACAATTCAAGTAACAATGTCATATGATGGT
[G/C]ATTTAAACCAGTGTTTCAGAATTCTATTACAACCATAATATAGCC
TCTGAAAATGGTCAATAGAGTTGTATTTCATCTTAACTGGTTAACATAGA
TTACT