CSIRO_D5chr01_3755703 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr01_3755703
AliasChr01_3755703
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceGAGAGAGGTAATCAAAACTCAACTACCTCTTCTAGGGTTGGTGTTTTTTTTTTTTTCTGG TATACTTTACAATTTTACTTTGATTTATATAGCTCCTGAG
3' Flanking SequenceGATTTAGGACTTGCATATTCATTGAGTTGTTATAATAGTAAAAGAATTCTTGTAAGGAAA CAGTAATTAAGTCTTGTAACTAATTTTACATGTAAATGGG
SpeciesGossypium hirsutum
GermplasmSiokra 1-4
MCU-5 (PI 694627)
Source Typerestriction-site associated DNA
RNA-seq and restriction-site associated DNA
Restriction EnzymeEcoRI; ApekI; SbfI
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:3806568..3806767 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:3785664..3785863 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:49997963..49998165 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:42068222..42068420 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:3627431..3627629 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:4092337..4092535 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:3934614..3934812 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:4052511..4052709 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:3878825..3879023 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:4041380..4041579 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:3994929..3995128 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:4229325..4229524 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:4109683..4109885 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:4030684..4030882 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:4115484..4115682 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:49748595..49748795 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Germplasm
Stock NameType
Siokra 1-4accession
MCU-5 (PI 694627)accession
Sequence
>CSIRO_D5chr01_3755703 ID=CSIRO_D5chr01_3755703; Name=CSIRO_D5chr01_3755703; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GAGAGAGGTAATCAAAACTCAACTACCTCTTCTAGGGTTGGTGTTTTTTT
TTTTTTCTGGTATACTTTACAATTTTACTTTGATTTATATAGCTCCTGAG
[G/A]GATTTAGGACTTGCATATTCATTGAGTTGTTATAATAGTAAAAGA
ATTCTTGTAAGGAAACAGTAATTAAGTCTTGTAACTAATTTTACATGTAA
ATGGG