CIR_step1repc51828-contig1:73 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_step1repc51828-contig1:73
Aliasstep1repc51828-contig1:73
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTTATGTTCCTTACCCTCATCTTGGTTTCYTTSTACTCGGGTATTTTCGGATATTCGACTT
3' Flanking SequenceGTGTTTCTCGTGCTCTTTAGGCTTTTCCAATTTGGGGAACTCGGGTTTTTCTTCTGGTAC
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018216.1chromosomeCM018216.1:63455066..63455188 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018216.1chromosomeCM018216.1:63468113..63468235 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018216.1chromosomeCM018216.1:63481778..63481900 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr5chromosomeDt_chr5:10584102..10584224 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold53602supercontigscaffold53602:239..361 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:66224033..66224155 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:66276218..66276340 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:67540252..67540374 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:64647867..64647989 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:64053116..64053238 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D02chromosomeGbar_D02:64066160..64066282 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D02chromosomeGbar_D02:64079821..64079943 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:65316662..65316784 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:66424447..66424569 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:68038572..68038694 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:64944223..64944345 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:68540284..68540406 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:62690870..62690992 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:64143525..64143647 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_step1repc51828-contig1:73 ID=CIR_step1repc51828-contig1:73; Name=CIR_step1repc51828-contig1:73; organism=Gossypium spp.; type=genetic_marker; length=125bp
TTATGTTCCTTACCCTCATCTTGGTTTCYTTSTACTCGGGTATTTTCGGA
TATTCGACTT[T/C]GTGTTTCTCGTGCTCTTTAGGCTTTTCCAATTTGG
GGAACTCGGGTTTTTCTTCTGGTAC