CIR_step1repc50326-contig1:346 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_step1repc50326-contig1:346
Aliasstep1repc50326-contig1:346
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceACAACTTYGCCCGTGGYCACTACACYATTGGCAARGGATYGTYGACYTSTGYTTGGACCG
3' Flanking SequenceATCAGGAARCTTGCTGATAACTGYACYGGTCTTCAAGGWTTCCTTGTTTTCAACGCTGTT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:50664520..50664641 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:77441823..77441944 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:3372550..3372671 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:2905402..2905523 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:4174533..4174654 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:49029611..49029732 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:123413372..123413493 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:2615544..2615665 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:4490954..4491075 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:47665939..47666060 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:60003628..60003749 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:52528256..52528377 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:81436886..81437007 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:53333383..53333504 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:84191033..84191154 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:52385452..52385573 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:81685412..81685533 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:50391873..50391994 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:77331357..77331478 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:48721530..48721651 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:77918532..77918653 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:53824269..53824390 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:78338400..78338521 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:50792628..50792749 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:79965058..79965179 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:53723127..53723248 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:88456686..88456807 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:50998425..50998546 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:78407596..78407717 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:54298498..54298619 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:85426286..85426407 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:105302263..105302384 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:107111423..107111544 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:3329929..3330050 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:4028245..4028366 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:50694888..50695009 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:26785807..26785928 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:21315068..21315189 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:50624724..50624845 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:19461676..19461797 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12_444391chromosomeChr12_444391:1591..1712 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:101461716..101461837 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:87897453..87897574 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:173292339..173292460 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_step1repc50326-contig1:346 ID=CIR_step1repc50326-contig1:346; Name=CIR_step1repc50326-contig1:346; organism=Gossypium spp.; type=genetic_marker; length=125bp
ACAACTTYGCCCGTGGYCACTACACYATTGGCAARGGATYGTYGACYTST
GYTTGGACCG[T/C]ATCAGGAARCTTGCTGATAACTGYACYGGTCTTCA
AGGWTTCCTTGTTTTCAACGCTGTT