CIR_step1repc50326-contig1:334 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_step1repc50326-contig1:334
Aliasstep1repc50326-contig1:334
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceAAGACGCWGCYAACAACTTYGCCCGTGGYCACTACACYATTGGCAARGGATYGTYGACYT
3' Flanking SequenceTGYTTGGACCGYATCAGGAARCTTGCTGATAACTGYACYGGTCTTCAAGGWTTCCTTGTT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:77441835..77441956 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:3372538..3372659 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:2905390..2905511 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:4174521..4174642 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016617.1chromosomeCM016617.1:123413384..123413505 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:4490942..4491063 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:60003640..60003761 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:81436898..81437019 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:84191045..84191166 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:81685424..81685545 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:77331369..77331490 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:77918544..77918665 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:78338412..78338533 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:50792640..50792761 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:79965070..79965191 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:88456698..88456819 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:78407608..78407729 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:54298510..54298631 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:85426298..85426419 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:105302275..105302396 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:107111435..107111556 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:3329917..3330038 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:4028233..4028354 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:50624736..50624857 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:19461688..19461809 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12_444391chromosomeChr12_444391:1579..1700 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:101461728..101461849 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:87897465..87897586 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:173292351..173292472 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_step1repc50326-contig1:334 ID=CIR_step1repc50326-contig1:334; Name=CIR_step1repc50326-contig1:334; organism=Gossypium spp.; type=genetic_marker; length=125bp
AAGACGCWGCYAACAACTTYGCCCGTGGYCACTACACYATTGGCAARGGA
TYGTYGACYT[G/C]TGYTTGGACCGYATCAGGAARCTTGCTGATAACTG
YACYGGTCTTCAAGGWTTCCTTGTT