CIR_step1repc50326-contig1:332 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_step1repc50326-contig1:332
Aliasstep1repc50326-contig1:332
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGGAAGACGCWGCYAACAACTTYGCCCGTGGYCACTACACYATTGGCAARGGATYGTYGAC
3' Flanking SequenceTSTGYTTGGACCGYATCAGGAARCTTGCTGATAACTGYACYGGTCTTCAAGGWTTCCTTG
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:77441837..77441958 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:3372536..3372657 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:2905388..2905509 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:4174519..4174640 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016617.1chromosomeCM016617.1:123413386..123413507 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:4490940..4491061 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:60003642..60003763 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:81436900..81437021 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:84191047..84191168 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:52385466..52385587 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:81685426..81685547 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:77331371..77331492 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:78338414..78338535 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:50792642..50792763 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:79965072..79965193 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:78407610..78407731 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:54298512..54298633 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:107111437..107111558 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:3329915..3330036 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:4028231..4028352 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:50624738..50624859 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:19461690..19461811 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12_444391chromosomeChr12_444391:1577..1698 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:101461730..101461851 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:87897467..87897588 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_step1repc50326-contig1:332 ID=CIR_step1repc50326-contig1:332; Name=CIR_step1repc50326-contig1:332; organism=Gossypium spp.; type=genetic_marker; length=125bp
GGAAGACGCWGCYAACAACTTYGCCCGTGGYCACTACACYATTGGCAARG
GATYGTYGAC[T/C]TSTGYTTGGACCGYATCAGGAARCTTGCTGATAAC
TGYACYGGTCTTCAAGGWTTCCTTG