CIR_step1repc50326-contig1:328 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_step1repc50326-contig1:328
Aliasstep1repc50326-contig1:328
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGCAAGGAAGACGCWGCYAACAACTTYGCCCGTGGYCACTACACYATTGGCAARGGATYGT
3' Flanking SequenceGACYTSTGYTTGGACCGYATCAGGAARCTTGCTGATAACTGYACYGGTCTTCAAGGWTTC
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:50664538..50664659 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:77441841..77441962 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:3372532..3372653 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:2905384..2905505 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:4174515..4174636 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:49029629..49029750 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:123413390..123413511 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:2615526..2615647 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:4490936..4491057 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:60003646..60003767 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:81436904..81437025 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:53333401..53333522 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:84191051..84191172 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:52385470..52385591 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:81685430..81685551 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:50391891..50392012 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:77331375..77331496 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D04chromosomeD04:53824287..53824408 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:78338418..78338539 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:50792646..50792767 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:79965076..79965197 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:53723145..53723266 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:50998443..50998564 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:78407614..78407735 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:54298516..54298637 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:107111441..107111562 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:3329911..3330032 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:4028227..4028348 +Gossypium anomalum (B1) genome NSF_v1n/a
chr12chromosomechr12:26785825..26785946 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:21315086..21315207 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:50624742..50624863 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:19461694..19461815 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12_444391chromosomeChr12_444391:1573..1694 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:101461734..101461855 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:87897471..87897592 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_step1repc50326-contig1:328 ID=CIR_step1repc50326-contig1:328; Name=CIR_step1repc50326-contig1:328; organism=Gossypium spp.; type=genetic_marker; length=125bp
GCAAGGAAGACGCWGCYAACAACTTYGCCCGTGGYCACTACACYATTGGC
AARGGATYGT[T/C]GACYTSTGYTTGGACCGYATCAGGAARCTTGCTGA
TAACTGYACYGGTCTTCAAGGWTTC