CIR_step1repc50326-contig1:311 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_step1repc50326-contig1:311
Aliasstep1repc50326-contig1:311
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceWGARCAACTCATCAGCGGCAAGGAAGACGCWGCYAACAACTTYGCCCGTGGYCACTACAC
3' Flanking SequenceATTGGCAARGGATYGTYGACYTSTGYTTGGACCGYATCAGGAARCTTGCTGATAACTGYA
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:50664555..50664675 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:77441858..77441978 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:3372516..3372636 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:2905368..2905488 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:4174499..4174619 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:49029646..49029766 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:123413407..123413527 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:2615510..2615630 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:4490920..4491040 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:47665974..47666094 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:60003663..60003783 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:52528291..52528411 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:81436921..81437041 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:53333418..53333538 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:84191068..84191188 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:52385487..52385607 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:81685447..81685567 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:50391908..50392028 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:77331392..77331512 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:48721565..48721685 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:77918567..77918687 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:53824304..53824424 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:78338435..78338555 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:50792663..50792783 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:79965093..79965213 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:53723162..53723282 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:88456721..88456841 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:50998460..50998580 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:78407631..78407751 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:54298533..54298653 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:85426321..85426441 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:105302298..105302418 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:107111458..107111578 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:3329895..3330015 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:4028211..4028331 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:50694923..50695043 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:26785842..26785962 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:21315103..21315223 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:50624759..50624879 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:19461711..19461831 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12_444391chromosomeChr12_444391:1557..1677 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:101461751..101461871 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:87897488..87897608 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:173292374..173292494 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_step1repc50326-contig1:311 ID=CIR_step1repc50326-contig1:311; Name=CIR_step1repc50326-contig1:311; organism=Gossypium spp.; type=genetic_marker; length=125bp
WGARCAACTCATCAGCGGCAAGGAAGACGCWGCYAACAACTTYGCCCGTG
GYCACTACAC[T/C]ATTGGCAARGGATYGTYGACYTSTGYTTGGACCGY
ATCAGGAARCTTGCTGATAACTGYA