CIR_step1repc48395-contig1:286 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_step1repc48395-contig1:286
Aliasstep1repc48395-contig1:286
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTGAGGGTGATGAGGGTGAAGATGATGAGTACTAAGAAGTACSTGTGATTGAGTGTGCKTA
3' Flanking SequenceGATGTCTTTTATTACCTGTTGCTTCCGTGTTATGYAAGCTTCTATTCTTTGAAGCTTGTT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:50663502..50663623 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:77440806..77440926 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:3373568..3373689 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:4175551..4175671 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:49028594..49028714 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:123412355..123412475 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:2616562..2616682 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:4491972..4492092 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:47664922..47665042 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:60002611..60002731 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:52527239..52527359 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:81435869..81435989 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:53332366..53332486 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:84190016..84190136 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:52384435..52384555 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:81684395..81684515 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:50390856..50390976 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:77330340..77330460 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:48720512..48720633 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:77917515..77917635 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:53823251..53823372 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:78337383..78337503 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:50791611..50791731 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:79964041..79964161 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:53722109..53722230 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:88455669..88455789 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:50997407..50997528 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:78406579..78406699 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:54297481..54297601 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:85425269..85425389 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:105301246..105301366 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:107110406..107110526 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:3330947..3331068 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:4029263..4029383 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:50693871..50693991 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:26784790..26784910 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:21314051..21314171 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:50623707..50623827 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:25288808..25288928 -Gossypium aridum (D4) genome ISU_v1n/a
Chr12_444391chromosomeChr12_444391:2609..2729 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:101460699..101460819 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:87896437..87896556 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:173291322..173291442 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_step1repc48395-contig1:286 ID=CIR_step1repc48395-contig1:286; Name=CIR_step1repc48395-contig1:286; organism=Gossypium spp.; type=genetic_marker; length=125bp
TGAGGGTGATGAGGGTGAAGATGATGAGTACTAAGAAGTACSTGTGATTG
AGTGTGCKTA[T/C]GATGTCTTTTATTACCTGTTGCTTCCGTGTTATGY
AAGCTTCTATTCTTTGAAGCTTGTT