CIR_step1repc48111-contig1:419 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_step1repc48111-contig1:419
Aliasstep1repc48111-contig1:419
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCGCWGCYAACAACTTYGCYCGTGGYCACTACACYATTGGCAARGAGATYGTYGACYTSTG
3' Flanking SequenceTTGGACCGYATCAGGAARCTTGCTGATAACTGYACYGGTCTTCAAGGWTTCCTTGTTTTC
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:77441832..77441952 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:3372542..3372662 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:2905394..2905514 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:4174525..4174645 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016617.1chromosomeCM016617.1:123413381..123413501 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:4490946..4491066 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:47665948..47666068 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:60003637..60003757 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:81436895..81437015 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:84191042..84191162 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:81685421..81685541 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:77331366..77331486 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:77918541..77918661 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:78338409..78338529 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:50792637..50792757 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:79965067..79965187 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:88456695..88456815 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:78407605..78407725 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:54298507..54298627 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:85426295..85426415 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:105302272..105302392 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:107111432..107111552 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:3329921..3330041 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:4028237..4028357 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:50694897..50695017 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr12chromosomeChr12:50624733..50624853 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:19461686..19461805 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12_444391chromosomeChr12_444391:1583..1703 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:101461725..101461845 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:87897462..87897582 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:173292348..173292468 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_step1repc48111-contig1:419 ID=CIR_step1repc48111-contig1:419; Name=CIR_step1repc48111-contig1:419; organism=Gossypium spp.; type=genetic_marker; length=125bp
CGCWGCYAACAACTTYGCYCGTGGYCACTACACYATTGGCAARGAGATYG
TYGACYTSTG[T/C]TTGGACCGYATCAGGAARCTTGCTGATAACTGYAC
YGGTCTTCAAGGWTTCCTTGTTTTC