CIR_step1repc48058-contig1:386 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_step1repc48058-contig1:386
Aliasstep1repc48058-contig1:386
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTAAAGAAATCAAGGAAGTTCGAGTCGAACAAGTATCAGCCAACGATTTCGTTCCTCGGGA
3' Flanking SequenceGGTATTCTTCTCACCATTCATGATAAATCCAGTGACAAAGATTCAGATAGGGTTATGGTT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:60176888..60177008 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:103882370..103882490 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:8559740..8559860 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:46913296..46913416 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:12977683..12977803 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:58400380..58400500 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:129982339..129982459 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold165.1supercontigscaffold165.1:373750..373870 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:6446323..6446443 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3046_A11supercontigscaffold3046_A11:69561..69681 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D11chromosomeD11:58267785..58267905 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:62881569..62881689 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:112900348..112900468 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:62111768..62111888 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:111398057..111398177 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:62800937..62801057 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:108965622..108965742 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:60112504..60112624 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:105744581..105744701 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:59621773..59621893 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:102304058..102304178 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:62632133..62632253 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:105442925..105443045 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:62111286..62111406 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:109262917..109263037 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:63643501..63643621 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:115864636..115864756 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:59716266..59716386 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:104385064..104385184 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:62684523..62684643 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:113682485..113682605 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:117743194..117743314 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:116075775..116075895 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:6867227..6867347 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:89660250..89660370 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:59731385..59731505 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:43363231..43363351 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:40813922..40814042 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:60735095..60735215 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:36796686..36796806 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:32155626..32155746 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:39255817..39255937 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:101531072..101531192 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:88730672..88730792 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_step1repc48058-contig1:386 ID=CIR_step1repc48058-contig1:386; Name=CIR_step1repc48058-contig1:386; organism=Gossypium spp.; type=genetic_marker; length=125bp
TAAAGAAATCAAGGAAGTTCGAGTCGAACAAGTATCAGCCAACGATTTCG
TTCCTCGGGA[T/C]GGTATTCTTCTCACCATTCATGATAAATCCAGTGA
CAAAGATTCAGATAGGGTTATGGTT