CIR_step1repc48057-contig1:254 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_step1repc48057-contig1:254
Aliasstep1repc48057-contig1:254
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCGATGCCTGCCTTGCCCAGGACCCTGACAGCAAGGTTGCCTGTGAAACATGCTCCAAGAC
3' Flanking SequenceAACATGGTCATGGTCTTTGGAGAAATTACCACCAAAGCTAATGTAGACTATGAGAAGATT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:20447641..20447761 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:26953097..26953217 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:19428371..19428491 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:26101975..26102095 -Gossypioides kirkii genome ISU_v3n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:27143319..27143439 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:34378594..34378714 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:59854002..59854122 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:54514503..54514623 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:20357257..20357377 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:20902024..20902144 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:20067069..20067189 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:20876361..20876481 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:20438523..20438643 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:20877819..20877939 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:26978412..26978532 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:20486896..20487016 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:26862045..26862165 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:20798634..20798754 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:26840396..26840516 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:21124706..21124826 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:27112016..27112136 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:20764090..20764210 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:27268190..27268310 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:21091235..21091355 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:28322341..28322461 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:28751269..28751389 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:33477118..33477238 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:27000397..27000517 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:20657825..20657945 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:17446737..17446857 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:15816352..15816472 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:20284040..20284160 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:16281123..16281243 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:13105752..13105872 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:15840526..15840646 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:60164279..60164399 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:24701119..24701239 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:55362872..55362992 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_step1repc48057-contig1:254 ID=CIR_step1repc48057-contig1:254; Name=CIR_step1repc48057-contig1:254; organism=Gossypium spp.; type=genetic_marker; length=125bp
CGATGCCTGCCTTGCCCAGGACCCTGACAGCAAGGTTGCCTGTGAAACAT
GCTCCAAGAC[T/C]AACATGGTCATGGTCTTTGGAGAAATTACCACCAA
AGCTAATGTAGACTATGAGAAGATT