CIR_step1repc48039-contig1:231 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_step1repc48039-contig1:231
Aliasstep1repc48039-contig1:231
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceGTCAAGTCACAARCTCCCTCGCACCCTGCATTRRTTACTTGASAGGSARTGGTGCTGGTG
3' Flanking SequenceGTTCCCCCAGGTTGCTGCRGCGGCATMAAATCTCTCAACTCCGCCGCCCAAACAACACCA
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:80241391..80241512 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:18510127..18510248 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:18543009..18543130 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:43818330..43818451 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_10chromosomeD5_10:43785577..43785698 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:99839533..99839654 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:45833244..45833365 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:38283311..38283432 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:23634058..23634179 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:17821846..17821967 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:17854911..17855032 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:70940092..70940213 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:18483274..18483395 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:18516345..18516466 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:84126956..84127077 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:18928069..18928190 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:18960915..18961036 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:85661551..85661672 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:18439738..18439859 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:18472458..18472579 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:84311608..84311729 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:19083426..19083547 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:19116289..19116410 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:79414675..79414796 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:19039332..19039453 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:19072197..19072318 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:80393947..80394068 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:18342612..18342733 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:18375494..18375615 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:82203744..82203865 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:18800327..18800448 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:18833239..18833360 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:81713515..81713636 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:18737944..18738065 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:19025473..19025594 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:83432548..83432669 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:18874897..18875018 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:18907786..18907907 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:87232379..87232500 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:19177103..19177224 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:19209968..19210089 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:50993140..50993261 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:29452078..29452199 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:18325676..18325797 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:18358361..18358482 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:75716249..75716370 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:18745138..18745259 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E10chromosomeE10:81579172..81579293 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:23496873..23496994 -Gossypium longicalyx (F1) genome NSF_v1n/a
F10chromosomeF10:23513565..23513686 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_step1repc48039-contig1:231 ID=CIR_step1repc48039-contig1:231; Name=CIR_step1repc48039-contig1:231; organism=Gossypium spp.; type=genetic_marker; length=125bp
GTCAAGTCACAARCTCCCTCGCACCCTGCATTRRTTACTTGASAGGSART
GGTGCTGGTG[G/C]GTTCCCCCAGGTTGCTGCRGCGGCATMAAATCTCT
CAACTCCGCCGCCCAAACAACACCA