CIR_Contig00940bb-Contig1:74 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00940bb-Contig1:74
AliasContig940bb-contig1:74
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAGTATAGCATCATGCCATGGATTAYTTCCSATTTTAAATTACACACTTTAATCAACATAA
3' Flanking SequenceCAAATGACATTCAAAGCCCACCTCCTCCGGAAGAAGACTAGGACCAACACGGGTWACACC
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:19479998..19480118 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:21478049..21478169 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:18247741..18247861 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:16443517..16443637 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:21961301..21961421 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:42064173..42064293 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:90549232..90549352 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016618.1chromosomeCM016618.1:90522480..90522600 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:39219947..39220067 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:47713912..47714032 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:19859202..19859322 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:19799497..19799617 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:19954586..19954706 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:22011989..22012109 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:19490683..19490803 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:21375693..21375813 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:19804817..19804937 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:22042888..22043008 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:19681200..19681320 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:22207590..22207710 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:19842767..19842887 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:21146876..21146996 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:19849984..19850104 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:21840910..21841030 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:19666455..19666574 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:21628519..21628639 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:20102367..20102487 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:21978343..21978463 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:19785418..19785538 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:21369957..21370077 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:20265571..20265691 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:22363305..22363425 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:23467053..23467173 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:21873715..21873835 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:18325770..18325890 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:64480922..64481042 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:18941008..18941128 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:16987842..16987962 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:15804965..15805085 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:19521463..19521583 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:16059210..16059330 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:14084671..14084791 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:16324052..16324172 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:23791406..23791526 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:18838299..18838419 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:108908403..108908523 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00940bb-Contig1:74 ID=CIR_Contig00940bb-Contig1:74; Name=CIR_Contig00940bb-Contig1:74; organism=Gossypium spp.; type=genetic_marker; length=125bp
AGTATAGCATCATGCCATGGATTAYTTCCSATTTTAAATTACACACTTTA
ATCAACATAA[A/G]CAAATGACATTCAAAGCCCACCTCCTCCGGAAGAA
GACTAGGACCAACACGGGTWACACC