CIR_Contig00827bb-Contig1:216 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00827bb-Contig1:216
AliasContig827bb-contig1:216
dbSNP IDN/A
TypeSNP
SNP AllelesT/G
5' Flanking SequenceACTTCTCAGCATATGGCCTTCACTTTGCTTGGTGCTACAATATTTGGTGACACATTCTTG
3' Flanking SequenceCTTGGTYGAAGTCTACTATTTACGAGGAGCTSTTGATGATGGTTGCTAAAGATGCTTGCT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018220.1chromosomeCM018220.1:59054574..59054694 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018207.1chromosomeCM018207.1:112198847..112198967 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_06chromosomeD5_06:57158706..57158826 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_06chromosomeKI_06:52612485..52612605 +Gossypioides kirkii genome ISU_v3
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:126445092..126445212 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_06chromosomeD10_06:3766226..3766346 +Gossypium turneri (D10) genome NSF_v1_a2
CM016619.1chromosomeCM016619.1:5559275..5559395 +Gossypium australe (G2) genome CRI_v1.1
scaffold235.1supercontigscaffold235.1:429391..429511 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr10chromosomeAt_chr10:63112329..63112449 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D06chromosomeD06:60050288..60050408 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A06chromosomeA06:99471714..99471834 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D06chromosomeGhir_D06:62853271..62853391 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A06chromosomeGhir_A06:119862027..119862147 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D06chromosomeD06:61660994..61661114 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A06chromosomeA06:122472255..122472375 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D06chromosomeD06:62107024..62107144 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A06chromosomeA06:121951025..121951145 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D06chromosomeD06:59305499..59305619 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A06chromosomeA06:117692471..117692591 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D06chromosomeGbar_D06:59186270..59186390 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A06chromosomeGbar_A06:111217800..111217920 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D06chromosomeD06:59134836..59134956 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A06chromosomeA06:114260390..114260510 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017628.1chromosomeCM017628.1:59535412..59535532 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017615.1chromosomeCM017615.1:117488877..117488997 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017654.1chromosomeCM017654.1:62859739..62859859 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017641.1chromosomeCM017641.1:122765982..122766102 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017706.1chromosomeCM017706.1:59586691..59586811 -Gossypium darwinii (AD5) genome HGS_v1.1
CM017693.1chromosomeCM017693.1:115478352..115478472 -Gossypium darwinii (AD5) genome HGS_v1.1
D06chromosomeD06:62721362..62721482 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A06chromosomeA06:124005166..124005286 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr06chromosomeChr06:124374250..124374370 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr06chromosomeChr06:125859247..125859367 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr06chromosomeChr06:56788938..56789058 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_06chromosomeB_06:169366..169486 -Gossypium anomalum (B1) genome NSF_v1
Chr10chromosomeChr10:59171320..59171440 -Gossypium thurberi (D1-5) genome CRI_v1
chr10chromosomechr10:45425839..45425959 -Gossypium armourianum (D2-1) genome ISU_v1
Chr_10chromosomeChr_10:40684657..40684777 -Gossypium harknessii (D2-2) genome ISU_v1
Chr10chromosomeChr10:60797062..60797182 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr10_4305940chromosomeChr10_4305940:457..577 +Gossypium aridum (D4) genome ISU_v1
Chr10chromosomeChr10:33178810..33178930 -Gossypium gossypioides (D6) genome ISU_v1
Chr10chromosomeChr10:39957082..39957202 -Gossypium lobatum (D7) genome ISU_v1
E06chromosomeE06:5903022..5903142 +Gossypium stocksii (E1) genome NSF_v1
F06chromosomeF06:94115593..94115713 -Gossypium longicalyx (F1) genome NSF_v1
Chr06chromosomeChr06:5688559..5688679 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00827bb-Contig1:216 ID=CIR_Contig00827bb-Contig1:216; Name=CIR_Contig00827bb-Contig1:216; organism=Gossypium spp.; type=genetic_marker; length=125bp
ACTTCTCAGCATATGGCCTTCACTTTGCTTGGTGCTACAATATTTGGTGA
CACATTCTTG[T/G]CTTGGTYGAAGTCTACTATTTACGAGGAGCTSTTG
ATGATGGTTGCTAAAGATGCTTGCT