CIR_Contig00810bb-Contig1:677 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00810bb-Contig1:677
AliasContig810bb-contig1:677
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceGGCATATGCAGATTACTATGAACGGGCCCTCACAAATGGTGTACTAGGCATCCAAAGGGG
3' Flanking SequenceACAGAACCTGGAGTGATGATTTACATGCTACCACAAGGTCGTGGAGTCTCAAAGGCTGTA
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:19464180..19464300 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:25645104..25645224 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:18483372..18483492 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:25787325..25787445 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:35294197..35294317 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:30842935..30843055 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:51357981..51358101 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold199364supercontigscaffold199364:4..124 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D07chromosomeD07:19322364..19322484 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:24977742..24977862 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:19940426..19940546 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:26150850..26150970 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:19140216..19140336 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:25083608..25083728 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:19908654..19908774 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:26210472..26210592 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:19462476..19462596 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:25946828..25946948 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:19904091..19904211 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:25672955..25673075 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:19523142..19523262 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:25601508..25601628 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:19882871..19882991 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:25603428..25603548 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:20167519..20167639 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:25803223..25803343 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:19795832..19795952 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:26039901..26040021 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:20123471..20123591 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:26445254..26445374 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:26945171..26945291 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:27386821..27386941 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:34423008..34423128 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:25778908..25779028 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:19615444..19615564 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:16579706..16579826 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:15140583..15140703 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:19382105..19382225 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:15488855..15488975 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:12397449..12397569 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:15010473..15010593 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:63660430..63660550 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr07chromosomeChr07:52323216..52323336 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00810bb-Contig1:677 ID=CIR_Contig00810bb-Contig1:677; Name=CIR_Contig00810bb-Contig1:677; organism=Gossypium spp.; type=genetic_marker; length=125bp
GGCATATGCAGATTACTATGAACGGGCCCTCACAAATGGTGTACTAGGCA
TCCAAAGGGG[G/C]ACAGAACCTGGAGTGATGATTTACATGCTACCACA
AGGTCGTGGAGTCTCAAAGGCTGTA