CIR_Contig00807bb-Contig1:67 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00807bb-Contig1:67
AliasContig807bb-contig1:67
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTGTTGAATGAAGGTAGCTTGCTTACTCTCAGCCACTAGTTAGAAGAAAATCCCTTGACTT
3' Flanking SequenceGCTTATGCCCTTATGCAATAAAGAAAGCAAATGAGGCGGGCTAAGATTCCATTCGAAGTA
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018218.1chromosomeCM018218.1:25838252..25838369 -
CM018214.1chromosomeCM018214.1:41787754..41787874 -
tig00026052_CRI-A2_v1.0.a1chromosometig00026052_CRI-A2_v1.0.a1:85379..85499 +
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:44160869..44160989 +
scaffold1171.1supercontigscaffold1171.1:531393..531513 +
Dt_chr4chromosomeDt_chr4:6210247..6210364 +
Dt_chr12chromosomeDt_chr12:38452665..38452782 +
At_chr13chromosomeAt_chr13:80645856..80645976 +
At_chr13chromosomeAt_chr13:87579585..87579705 +
scaffold3975_D04supercontigscaffold3975_D04:59637..59754 +
scaffold3564_A13supercontigscaffold3564_A13:344684..344804 +
Ghir_D04chromosomeGhir_D04:32895890..32896010 -
A13chromosomeA13:45236277..45236397 +
scaffold12226_objsupercontigscaffold12226_obj:2282..2402 -
D04chromosomeD04:34155582..34155699 -
A13chromosomeA13:43532829..43532949 +
A13chromosomeA13:42629768..42629888 +
D04chromosomeD04:30821655..30821772 -
Scaffold2071supercontigScaffold2071:41765..41885 +
Scaffold1588supercontigScaffold1588:4977..5097 -
D04chromosomeD04:34555681..34555798 +
A13chromosomeA13:45424632..45424752 +
CM017622.1chromosomeCM017622.1:44637076..44637196 +
CM017626.1chromosomeCM017626.1:27356364..27356481 -
CM017652.1chromosomeCM017652.1:28697156..28697273 +
CM017648.1chromosomeCM017648.1:46173314..46173434 +
CM017704.1chromosomeCM017704.1:26872504..26872621 -
D04chromosomeD04:29615458..29615575 +
Chr04chromosomeChr04:27271407..27271527 +
Contig00001chromosomeContig00001:373425..373545 +
Contig00038chromosomeContig00038:100211..100331 +
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00807bb-Contig1:67 ID=CIR_Contig00807bb-Contig1:67; Name=CIR_Contig00807bb-Contig1:67; organism=Gossypium spp.; type=genetic_marker; length=125bp
TGTTGAATGAAGGTAGCTTGCTTACTCTCAGCCACTAGTTAGAAGAAAAT
CCCTTGACTT[T/C]GCTTATGCCCTTATGCAATAAAGAAAGCAAATGAG
GCGGGCTAAGATTCCATTCGAAGTA