CIR_Contig00727bb-Contig1:126 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00727bb-Contig1:126
AliasContig727bb-contig1:126
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTGTCGGATTGGCTTTAGTGYTAATGGTGCCWCAGGCCGATGCTACAAGGTACATTGTTGG
3' Flanking SequenceRGGGGAGGCATCGGTTGGACTACTAATGTCAATTACACTGTCTGGGCTCGAGGAAAGCAC
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018225.1chromosomeCM018225.1:6010717..6010835 -
CM018212.1chromosomeCM018212.1:6646052..6646172 -
D5_11chromosomeD5_11:59929059..59929179 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:117720731..117720851 +
D10_11chromosomeD10_11:6001930..6002050 -
CM016624.1chromosomeCM016624.1:8251440..8251560 -
Dt_chr7chromosomeDt_chr7:4514821..4514941 -
At_chr7chromosomeAt_chr7:7542431..7542551 -
D11chromosomeD11:6497880..6498000 -
A11chromosomeA11:6272482..6272602 -
Ghir_D11chromosomeGhir_D11:6293471..6293591 -
Ghir_A11chromosomeGhir_A11:6851112..6851232 -
D11chromosomeD11:6211601..6211721 -
A11chromosomeA11:6535044..6535164 -
D11chromosomeD11:6353005..6353125 -
A11chromosomeA11:6727475..6727595 -
D11chromosomeD11:6260925..6261045 -
A11chromosomeA11:6901204..6901324 -
Gbar_D11chromosomeGbar_D11:6101074..6101194 -
Gbar_A11chromosomeGbar_A11:6447326..6447446 -
D11chromosomeD11:6190166..6190286 -
A11chromosomeA11:6660866..6660986 -
CM017633.1chromosomeCM017633.1:6057727..6057847 -
CM017620.1chromosomeCM017620.1:6852560..6852680 -
CM017659.1chromosomeCM017659.1:6375082..6375202 -
CM017646.1chromosomeCM017646.1:6901274..6901394 -
CM017711.1chromosomeCM017711.1:6156361..6156481 -
CM017698.1chromosomeCM017698.1:6718927..6719047 -
D11chromosomeD11:6420464..6420584 -
A11chromosomeA11:7019355..7019475 -
Chr11chromosomeChr11:6849468..6849588 -
Chr11chromosomeChr11:6609114..6609234 -
Chr11chromosomeChr11:57414069..57414189 +
B_11chromosomeB_11:6643875..6643995 -
Chr07chromosomeChr07:5997124..5997244 -
chr07chromosomechr07:5395712..5395832 -
Chr_07chromosomeChr_07:5811065..5811185 -
Chr07chromosomeChr07:6222185..6222305 -
Chr07chromosomeChr07:5091989..5092109 -
Chr07chromosomeChr07:4596551..4596671 -
Chr07chromosomeChr07:5232400..5232520 -
E11chromosomeE11:7483712..7483832 -
F11chromosomeF11:5797492..5797612 -
Chr11chromosomeChr11:178508477..178508597 +
Chr11chromosomeChr11:178506221..178506341 +
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00727bb-Contig1:126 ID=CIR_Contig00727bb-Contig1:126; Name=CIR_Contig00727bb-Contig1:126; organism=Gossypium spp.; type=genetic_marker; length=125bp
TGTCGGATTGGCTTTAGTGYTAATGGTGCCWCAGGCCGATGCTACAAGGT
ACATTGTTGG[A/G]RGGGGAGGCATCGGTTGGACTACTAATGTCAATTA
CACTGTCTGGGCTCGAGGAAAGCAC