CIR_Contig00623bb-Contig1:316 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00623bb-Contig1:316
AliasContig623bb-contig1:316
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTGGCCCAWCCAGTTGGAACGAAACCGAGGATGCTTGCAAATAGGTCAGCAATTGATAACC
3' Flanking SequenceGGTGAAGGCAACGATAAGGCAAAGRSCAACAACAAGTCCAATGGATATAACCCCTTGCAT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018217.1chromosomeCM018217.1:39899276..39899396 +
CM018204.1chromosomeCM018204.1:15191014..15191134 -
D5_02chromosomeD5_02:33836738..33836858 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:96588976..96589096 +
D10_02chromosomeD10_02:38370022..38370142 +
CM016615.1chromosomeCM016615.1:91084528..91084648 +
At_chr5chromosomeAt_chr5:11257847..11257967 +
Dt_chr3chromosomeDt_chr3:12177160..12177280 -
scaffold151025supercontigscaffold151025:204..324 +
scaffold150815supercontigscaffold150815:204..324 +
D03chromosomeD03:33349093..33349213 +
A03chromosomeA03:14044229..14044349 -
Ghir_D03chromosomeGhir_D03:39339406..39339526 +
Ghir_A03chromosomeGhir_A03:16324156..16324276 -
D03chromosomeD03:40858665..40858785 +
A03chromosomeA03:15599266..15599386 -
D03chromosomeD03:40271934..40272054 +
A03chromosomeA03:16145390..16145510 -
D03chromosomeD03:39702906..39703026 +
A03chromosomeA03:15422903..15423023 -
Scaffold2484supercontigScaffold2484:1302..1422 +
Gbar_D03chromosomeGbar_D03:38315813..38315933 +
D03chromosomeD03:40868711..40868831 +
A03chromosomeA03:15129128..15129248 -
CM017625.1chromosomeCM017625.1:39296789..39296909 +
CM017612.1chromosomeCM017612.1:15595918..15596038 -
CM017651.1chromosomeCM017651.1:43203199..43203319 +
CM017638.1chromosomeCM017638.1:15911443..15911563 -
CM017703.1chromosomeCM017703.1:40826020..40826140 +
CM017690.1chromosomeCM017690.1:15361691..15361811 -
D03chromosomeD03:41370077..41370197 +
A03chromosomeA03:16454234..16454354 -
Chr02chromosomeChr02:15399866..15399986 -
Chr01chromosomeChr01:102456608..102456728 +
Chr02chromosomeChr02:35921650..35921770 +
B_04chromosomeB_04:15229836..15229956 -
Chr03chromosomeChr03:37376905..37377025 +
chr03chromosomechr03:24106905..24107025 +
Chr_03chromosomeChr_03:20640304..20640424 +
Chr03chromosomeChr03:39300742..39300862 +
Chr03chromosomeChr03:21117715..21117835 +
Chr03chromosomeChr03:22506530..22506650 +
E02chromosomeE02:69813274..69813394 +
F02chromosomeF02:62518474..62518594 +
Chr02chromosomeChr02:31823322..31823442 -
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00623bb-Contig1:316 ID=CIR_Contig00623bb-Contig1:316; Name=CIR_Contig00623bb-Contig1:316; organism=Gossypium spp.; type=genetic_marker; length=125bp
TGGCCCAWCCAGTTGGAACGAAACCGAGGATGCTTGCAAATAGGTCAGCA
ATTGATAACC[T/C]GGTGAAGGCAACGATAAGGCAAAGRSCAACAACAA
GTCCAATGGATATAACCCCTTGCAT