CIR_Contig00350bb-Contig1:349 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig00350bb-Contig1:349
AliasContig350bb-contig1:349
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceCATATCATCCTCAACATTCTGGTATCTCAGAAGTTCGAGGTCGAACACCTCAGMRGTCCA
3' Flanking SequenceTCCTCTCGAACTATGGATTGGACCCATCTTGGAAGGTCTATKCCTTCCTCRTTYRWTAAK
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:18305783..18305902 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:21790606..21790725 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:47859424..47859543 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:13369156..13369275 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:100994539..100994658 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:17653424..17653543 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:30200703..30200821 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:19284072..19284191 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:16526822..16526941 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4556_D11supercontigscaffold4556_D11:32967..33086 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:22269193..22269312 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:18898633..18898752 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:22631602..22631721 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:18397575..18397694 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:21861246..21861365 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:18908625..18908744 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:22348039..22348158 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:18694586..18694705 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:22775273..22775392 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold2907_ERROPOS15385168supercontigScaffold2907_ERROPOS15385168:66698..66817 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D11chromosomeGbar_D11:18603152..18603271 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:18479128..18479247 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:21784212..21784331 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:18347227..18347346 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:22289812..22289931 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:18874720..18874839 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:22390514..22390633 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:18485221..18485340 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:22115100..22115219 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:19268142..19268261 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:22954895..22955014 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:23420889..23421008 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:23305199..23305318 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:45780586..45780705 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:21273875..21273994 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:18448945..18449064 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:15404575..15404694 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:15704561..15704680 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:18527889..18528008 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:14188783..14188902 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:12423861..12423980 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:14945805..14945924 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:24132353..24132472 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:29172439..29172558 +Gossypium longicalyx (F1) genome NSF_v1n/a
F11chromosomeF11:17422452..17422571 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:149696637..149696755 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig00350bb-Contig1:349 ID=CIR_Contig00350bb-Contig1:349; Name=CIR_Contig00350bb-Contig1:349; organism=Gossypium spp.; type=genetic_marker; length=125bp
CATATCATCCTCAACATTCTGGTATCTCAGAAGTTCGAGGTCGAACACCT
CAGMRGTCCA[G/C]TCCTCTCGAACTATGGATTGGACCCATCTTGGAAG
GTCTATKCCTTCCTCRTTYRWTAAK