CIR_Contig02596bb-Contig1:990 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig02596bb-Contig1:990
AliasContig2596bb-contig1:990
dbSNP IDN/A
TypeSNP
SNP AllelesC/A
5' Flanking SequenceGCTCTATAAATCTTATASAGAGCACCGACATTGTCCGAACAGGCTTTAGCAATCTTACAR
3' Flanking SequenceAACTGTGCCAGAGATTATGCAGAGCAGTGGAATATTTACCTACAACCTGTCATGGAGTGA
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:10569695..10569815 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:12313897..12314017 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:10148686..10148806 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:13789784..13789904 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:50392903..50393023 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:17241728..17241848 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:12724275..12724395 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr2chromosomeDt_chr2:45124229..45124349 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:9713227..9713347 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:12078273..12078393 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:11033348..11033468 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:12829880..12830000 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:10809949..10810069 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:12391313..12391433 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:10562799..10562919 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:12727099..12727219 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:10922544..10922664 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:12585000..12585120 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:11177222..11177342 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:12459486..12459606 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:10991625..10991745 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:12474765..12474885 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:10769505..10769625 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:13442942..13443062 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:11665290..11665410 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:12738202..12738322 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:10964355..10964475 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:12555336..12555456 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:11241467..11241587 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:12736002..12736122 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:12375061..12375181 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:13679956..13680076 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:10008377..10008497 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:13840522..13840642 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:10695119..10695239 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:9730371..9730491 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:8764516..8764636 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:10865500..10865620 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:10931023..10931143 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:7555030..7555150 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:9908346..9908466 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:15354894..15355014 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:11062840..11062960 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:176894727..176894847 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig02596bb-Contig1:990 ID=CIR_Contig02596bb-Contig1:990; Name=CIR_Contig02596bb-Contig1:990; organism=Gossypium spp.; type=genetic_marker; length=125bp
GCTCTATAAATCTTATASAGAGCACCGACATTGTCCGAACAGGCTTTAGC
AATCTTACAR[C/A]AACTGTGCCAGAGATTATGCAGAGCAGTGGAATAT
TTACCTACAACCTGTCATGGAGTGA