CIR_Contig02596bb-Contig1:1129 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig02596bb-Contig1:1129
AliasContig2596bb-contig1:1129
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTGTAATATCAAGCCCACAGTCACAGTACAAATTGTTTCGAAATCCAAAGTTCCAAAATGC
3' Flanking SequenceGGGAMGTACTTAMARTTATCTGAATTTTTAAGMATGGCAAACACCACTAGCTCTCTAAAT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:10570296..10570416 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:12314514..12314634 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:10149300..10149420 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:13790401..13790521 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:50392291..50392411 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:17242348..17242468 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:12724892..12725012 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr2chromosomeDt_chr2:45123627..45123747 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:9713829..9713949 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:12078890..12079010 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:11033950..11034070 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:12830497..12830617 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:10810551..10810671 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:12391930..12392050 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:10563401..10563521 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:12727715..12727835 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:10923146..10923266 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:12585617..12585737 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:11177823..11177943 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:12460103..12460223 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:10992226..10992346 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:12475382..12475502 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:10770106..10770226 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:13443559..13443679 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:11665893..11666013 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:12738819..12738939 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:10964956..10965076 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:12555953..12556073 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:11242069..11242189 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:12736619..12736739 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:12375678..12375798 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:13680573..13680693 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:10008991..10009111 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:13841143..13841262 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:10695729..10695849 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:9732199..9732319 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:8765128..8765248 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:10866093..10866213 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:10931634..10931754 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:7555643..7555763 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:9909044..9909164 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:15355511..15355631 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:11063453..11063573 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:176894111..176894231 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig02596bb-Contig1:1129 ID=CIR_Contig02596bb-Contig1:1129; Name=CIR_Contig02596bb-Contig1:1129; organism=Gossypium spp.; type=genetic_marker; length=125bp
TGTAATATCAAGCCCACAGTCACAGTACAAATTGTTTCGAAATCCAAAGT
TCCAAAATGC[T/C]GGGAMGTACTTAMARTTATCTGAATTTTTAAGMAT
GGCAAACACCACTAGCTCTCTAAAT