CIR_Contig02419bb-Contig1:257 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig02419bb-Contig1:257
AliasContig2419bb-contig1:257
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGGCGGTAGATAGGTCCCCCACTTCGATTCCCGCCCCGTTAGCATCTCCGATCCGAGATAA
3' Flanking SequenceGGATTACTCCGTTAGGTCTTTTCGGTCCGGAGCCGGCCGGTAATGGACCTACTTACCTTG
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:79386304..79386423 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00021227_CRI-A2_v1.0.a1chromosometig00021227_CRI-A2_v1.0.a1:94518..94638 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:23685268..23685388 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold272885supercontigscaffold272885:29..149 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:33827300..33827420 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:33724012..33724132 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:33522468..33522588 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:3601471..3601591 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:34099300..34099420 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:33682514..33682634 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold688supercontigScaffold688:302809..302929 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017610.1chromosomeCM017610.1:34092553..34092673 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:34218736..34218856 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:32742049..32742169 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:34700664..34700784 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:33467248..33467368 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:27714358..27714478 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Contig00001chromosomeContig00001:199841..199961 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Contig00001chromosomeContig00001:42292..42412 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Contig00036chromosomeContig00036:109650..109770 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:80105126..80105246 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig02419bb-Contig1:257 ID=CIR_Contig02419bb-Contig1:257; Name=CIR_Contig02419bb-Contig1:257; organism=Gossypium spp.; type=genetic_marker; length=125bp
GGCGGTAGATAGGTCCCCCACTTCGATTCCCGCCCCGTTAGCATCTCCGA
TCCGAGATAA[A/G]GGATTACTCCGTTAGGTCTTTTCGGTCCGGAGCCG
GCCGGTAATGGACCTACTTACCTTG