CIR_Contig02084bb-Contig1:187 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig02084bb-Contig1:187
AliasContig2084bb-contig1:187
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTCCGATGGGACTTAGATTAAATCCCTGCGCATAACTATTGAGGAAGTTGGAAGYCCTAYT
3' Flanking SequenceAAACCATAATTATATCCAATMACAKKGCKGYKGGYARSRCCTGGAGATAGTTCTTTAGGA
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:61220222..61220342 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:1285032..1285152 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:94965165..94965285 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:999530..999650 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:780308..780428 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold743.1supercontigscaffold743.1:660485..660605 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:1965164..1965284 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:60503270..60503390 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:1206636..1206756 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:61441119..61441239 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:1787628..1787748 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:62527322..62527442 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:1193445..1193565 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:62647712..62647832 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:1265361..1265481 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:60877310..60877430 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:1198083..1198203 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:62781689..62781809 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:1335774..1335894 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:65377891..65378011 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:1211109..1211229 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:61612523..61612643 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:1394739..1394859 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:64395932..64396052 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:1405885..1406005 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:62524052..62524172 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:1465076..1465196 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:65027280..65027400 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:1221462..1221582 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:93502910..93503030 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:96105412..96105532 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:12033793..12033913 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:57056745..57056865 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:54090353..54090473 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:51586578..51586698 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:62070219..62070339 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:51309491..51309611 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:42024222..42024342 +Gossypium gossypioides (D6) genome ISU_v1n/a
F05chromosomeF05:75328307..75328427 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:12920338..12920458 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig02084bb-Contig1:187 ID=CIR_Contig02084bb-Contig1:187; Name=CIR_Contig02084bb-Contig1:187; organism=Gossypium spp.; type=genetic_marker; length=125bp
TCCGATGGGACTTAGATTAAATCCCTGCGCATAACTATTGAGGAAGTTGG
AAGYCCTAYT[T/C]AAACCATAATTATATCCAATMACAKKGCKGYKGGY
ARSRCCTGGAGATAGTTCTTTAGGA