CIR_Contig01806bb-Contig1:927 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig01806bb-Contig1:927
AliasContig1806bb-contig1:927
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceAGGGAACTAGAAGGGAAAGAATGATGATTTTAAAACACAATGTAGCTTCGAATTCGAGCA
3' Flanking SequenceATGGRAAGTASACGGTCTGCACGGATTGAATTCRCCGTATTTGTTTCCAAGGAGATCGTT
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:1127754..1127874 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:1234327..1234447 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:922605..922725 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:1313849..1313969 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:930309..930429 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:95818769..95818889 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:55320586..55320706 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold799.1supercontigscaffold799.1:311145..311265 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:1154441..1154561 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:1185006..1185126 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:1116202..1116322 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:1193494..1193614 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:1025240..1025360 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:1338929..1339049 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:1107702..1107822 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:1419381..1419501 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:1097435..1097555 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:1246183..1246303 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:925514..925634 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:1298790..1298910 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:953961..954081 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:1251714..1251834 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:996273..996393 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:1394995..1395115 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:1213493..1213613 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:1262429..1262549 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:1044443..1044563 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:1069218..1069338 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:1147839..1147959 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:1422311..1422431 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:1337760..1337880 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:1262870..1262990 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:931013..931133 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:93748975..93749095 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:983929..984049 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:935213..935333 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:1012196..1012316 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:1175274..1175394 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:738237..738357 +Gossypium gossypioides (D6) genome ISU_v1n/a
E13chromosomeE13:1512357..1512477 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:1002199..1002319 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig01806bb-Contig1:927 ID=CIR_Contig01806bb-Contig1:927; Name=CIR_Contig01806bb-Contig1:927; organism=Gossypium spp.; type=genetic_marker; length=125bp
AGGGAACTAGAAGGGAAAGAATGATGATTTTAAAACACAATGTAGCTTCG
AATTCGAGCA[G/C]ATGGRAAGTASACGGTCTGCACGGATTGAATTCRC
CGTATTTGTTTCCAAGGAGATCGTT