CIR_Contig01806bb-Contig1:547 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig01806bb-Contig1:547
AliasContig1806bb-contig1:547
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceTGGCCAAGTCACGAGACGTCGAGCAATGAAAAATATGAAATGCTTGCAATCTGGTACGGA
3' Flanking SequenceATGTACCCRGAGATCAAGGAGAAAGTTATTTGTCAAGACACCAGGAGAAATCAGAGCCTC
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:1127109..1127229 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:1233682..1233802 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:921959..922079 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:515449..515569 +Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:1313204..1313324 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:929664..929784 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:95819414..95819534 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:55319941..55320061 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold799.1supercontigscaffold799.1:311789..311909 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:1153796..1153916 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:1184362..1184482 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:1115557..1115677 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:1192850..1192970 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:1024595..1024715 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:1338285..1338405 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:1107057..1107177 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:1418737..1418857 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:1096790..1096910 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:1245539..1245659 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:924869..924989 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:1298145..1298265 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:953316..953436 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:1251069..1251189 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:995628..995748 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:1394350..1394470 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:1212848..1212968 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:1257218..1257338 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:1043798..1043918 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:1068573..1068693 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:1147194..1147314 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:1421667..1421787 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:1337115..1337235 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:1262225..1262345 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:930367..930487 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:93749620..93749740 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:983284..983404 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:934568..934688 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:1011551..1011671 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:1174630..1174749 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:1070996..1071116 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:737592..737712 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:1027443..1027563 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:1511712..1511831 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:1001555..1001675 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:114227961..114228081 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig01806bb-Contig1:547 ID=CIR_Contig01806bb-Contig1:547; Name=CIR_Contig01806bb-Contig1:547; organism=Gossypium spp.; type=genetic_marker; length=125bp
TGGCCAAGTCACGAGACGTCGAGCAATGAAAAATATGAAATGCTTGCAAT
CTGGTACGGA[G/C]ATGTACCCRGAGATCAAGGAGAAAGTTATTTGTCA
AGACACCAGGAGAAATCAGAGCCTC