CIR_Contig01806bb-Contig1:319 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig01806bb-Contig1:319
AliasContig1806bb-contig1:319
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTTTGAATCTTGCCATTGCGACAGCTGCTGCAGCTGAARTTGCGGTTGCTGCAGCACAAGC
3' Flanking SequenceGCAGCCSAGGTCGTTCGTCTGGCTAATGCCTCTAACCAYTTCAGTAATTTCACAACAARG
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:1126780..1126900 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:1233353..1233473 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:921630..921750 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:1312875..1312995 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:929335..929455 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:95819743..95819863 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:55319612..55319732 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold799.1supercontigscaffold799.1:312118..312238 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:1153467..1153587 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:1184033..1184153 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:1115228..1115348 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:1192521..1192641 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:1024266..1024386 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:1337956..1338076 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:1106728..1106848 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:1418408..1418528 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:1096461..1096581 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:1245210..1245330 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:924540..924660 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:1297816..1297936 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:952987..953107 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:1250740..1250860 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:995299..995419 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:1394021..1394141 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:1212519..1212639 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:1256889..1257009 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:1043469..1043589 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:1068244..1068364 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:1146865..1146985 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:1421338..1421458 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:1336786..1336906 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:1261896..1262016 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:930038..930158 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:93749949..93750069 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:982955..983075 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:934239..934359 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:1011222..1011342 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:1174300..1174420 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:1070667..1070787 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:737263..737383 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:1027114..1027234 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:1511383..1511503 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig01806bb-Contig1:319 ID=CIR_Contig01806bb-Contig1:319; Name=CIR_Contig01806bb-Contig1:319; organism=Gossypium spp.; type=genetic_marker; length=125bp
TTTGAATCTTGCCATTGCGACAGCTGCTGCAGCTGAARTTGCGGTTGCTG
CAGCACAAGC[A/G]GCAGCCSAGGTCGTTCGTCTGGCTAATGCCTCTAA
CCAYTTCAGTAATTTCACAACAARG