CIR_Contig01806bb-Contig1:296 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig01806bb-Contig1:296
AliasContig1806bb-contig1:296
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceACCGAGGATCAAAGAAAGCATGCTTTGAATCTTGCCATTGCGACAGCTGCTGCAGCTGAA
3' Flanking SequenceTTGCGGTTGCTGCAGCACAAGCRGCAGCCSAGGTCGTTCGTCTGGCTAATGCCTCTAACC
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:1126757..1126877 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:1233330..1233450 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:921607..921727 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:515097..515217 +Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:1312852..1312972 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:929312..929432 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:95819766..95819886 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:55319589..55319709 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold799.1supercontigscaffold799.1:312141..312261 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:1153444..1153564 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:1184010..1184130 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:1115205..1115325 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:1192498..1192618 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:1024243..1024363 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:1337933..1338053 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:1106705..1106825 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:1418385..1418505 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:1096438..1096558 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:1245187..1245307 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:924517..924637 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:1297793..1297913 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:952964..953084 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:1250717..1250837 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:995276..995396 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:1393998..1394118 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:1212496..1212616 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:1256866..1256986 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:1043446..1043566 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:1068221..1068341 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:1146842..1146962 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:1421315..1421435 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:1336763..1336883 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:1261873..1261993 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:930015..930135 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:93749972..93750092 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:982932..983052 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:934216..934336 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:1011199..1011319 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:1174277..1174397 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:1070644..1070764 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:737240..737360 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:1027091..1027211 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:1511360..1511480 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr05chromosomeChr05:114228313..114228433 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig01806bb-Contig1:296 ID=CIR_Contig01806bb-Contig1:296; Name=CIR_Contig01806bb-Contig1:296; organism=Gossypium spp.; type=genetic_marker; length=125bp
ACCGAGGATCAAAGAAAGCATGCTTTGAATCTTGCCATTGCGACAGCTGC
TGCAGCTGAA[A/G]TTGCGGTTGCTGCAGCACAAGCRGCAGCCSAGGTC
GTTCGTCTGGCTAATGCCTCTAACC