CIR_Contig01806bb-Contig1:1030 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig01806bb-Contig1:1030
AliasContig1806bb-contig1:1030
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGTTTCCAAGGAGATCGTTTTGTCGTGTGCAGAACCAGAATCCCGCTGGGAAYGAGAGTTC
3' Flanking SequenceGTCCCAAGCTCTCCGGTTTTTCCTACCTAYATGGCTGCAACTGAATCAGCAAAAGCAAAG
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:1127857..1127977 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:1234430..1234550 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:922708..922828 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:1313952..1314072 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:930412..930532 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:95818666..95818786 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:55320689..55320809 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold799.1supercontigscaffold799.1:311042..311162 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:1154544..1154664 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:1185109..1185229 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:1116305..1116425 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:1193597..1193717 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:1025343..1025463 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:1339032..1339152 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:1107805..1107925 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:1419484..1419604 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:1097538..1097658 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:1246286..1246406 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:925617..925737 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:1298893..1299013 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:954064..954184 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:1251817..1251937 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:996376..996496 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:1395098..1395218 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:1213596..1213716 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:1262532..1262652 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:1044546..1044666 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:1069321..1069441 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:1147942..1148062 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:1422414..1422534 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:1337863..1337983 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:1262973..1263093 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:931116..931236 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:93748872..93748992 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:984032..984152 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:935316..935436 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:1012780..1012900 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_13chromosomeChr_13:1012299..1012419 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:1175377..1175497 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:738340..738460 +Gossypium gossypioides (D6) genome ISU_v1n/a
E13chromosomeE13:1512460..1512580 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:1002302..1002422 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig01806bb-Contig1:1030 ID=CIR_Contig01806bb-Contig1:1030; Name=CIR_Contig01806bb-Contig1:1030; organism=Gossypium spp.; type=genetic_marker; length=125bp
GTTTCCAAGGAGATCGTTTTGTCGTGTGCAGAACCAGAATCCCGCTGGGA
AYGAGAGTTC[T/C]GTCCCAAGCTCTCCGGTTTTTCCTACCTAYATGGC
TGCAACTGAATCAGCAAAAGCAAAG