CIR_Contig01674bb-Contig1:243 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig01674bb-Contig1:243
AliasContig1674bb-contig1:243
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGAGKTGGTGGATACRAGTTTTGTATAGAAATAGAGAAGAATTGAAACAAAWWAGGCCACA
3' Flanking SequenceCAGCAAGATCAAAAACCCTGWTCAATGAGATAATCACCAAGCCTTTCCACAACCATRTTG
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:56204872..56204992 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:104040587..104040707 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:55280970..55281090 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:119464602..119464722 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:57026312..57026432 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:154753097..154753217 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:24235951..24236071 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold626.1supercontigscaffold626.1:460191..460311 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:56320052..56320172 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:76227399..76227519 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:59416128..59416248 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:104011033..104011153 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:60354063..60354183 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:106214270..106214390 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:59594441..59594561 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:104473515..104473635 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:56242845..56242965 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:102957206..102957326 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:56004455..56004575 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:104929516..104929636 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:57130298..57130418 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:108444163..108444283 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:56989013..56989133 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:106051630..106051750 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:60255825..60255945 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:111176969..111177089 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:56817603..56817723 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:106144212..106144332 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:60706903..60707023 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:107203257..107203377 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:113233188..113233308 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:117810678..117810798 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:55261078..55261198 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:56419992..56420112 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:41843381..41843501 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:40419917..40420037 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:59269392..59269512 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:39197723..39197843 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:30465790..30465910 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:38247494..38247614 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:109826873..109826992 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:91596621..91596741 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:3646488..3646608 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig01674bb-Contig1:243 ID=CIR_Contig01674bb-Contig1:243; Name=CIR_Contig01674bb-Contig1:243; organism=Gossypium spp.; type=genetic_marker; length=125bp
GAGKTGGTGGATACRAGTTTTGTATAGAAATAGAGAAGAATTGAAACAAA
WWAGGCCACA[A/G]CAGCAAGATCAAAAACCCTGWTCAATGAGATAATC
ACCAAGCCTTTCCACAACCATRTTG