CIR_Contig01674bb-Contig1:234 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig01674bb-Contig1:234
AliasContig1674bb-contig1:234
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceTCACTATAAGAGKTGGTGGATACRAGTTTTGTATAGAAATAGAGAAGAATTGAAACAAAW
3' Flanking SequenceAGGCCACARCAGCAAGATCAAAAACCCTGWTCAATGAGATAATCACCAAGCCTTTCCACA
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:104040596..104040716 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:119464611..119464733 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:57026321..57026441 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:154753106..154753226 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:24235942..24236062 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:76227408..76227528 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:104011042..104011162 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:106214279..106214399 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:104473524..104473644 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:102957215..102957335 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:104929525..104929645 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:108444172..108444292 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:106051639..106051759 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:111176978..111177098 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:106144221..106144341 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:107203266..107203386 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:113233197..113233319 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:117810687..117810809 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:56420001..56420121 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:41843390..41843510 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:40419926..40420046 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:59269401..59269521 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:39197732..39197852 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:30465799..30465919 -Gossypium gossypioides (D6) genome ISU_v1n/a
F13chromosomeF13:91596630..91596750 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig01674bb-Contig1:234 ID=CIR_Contig01674bb-Contig1:234; Name=CIR_Contig01674bb-Contig1:234; organism=Gossypium spp.; type=genetic_marker; length=125bp
TCACTATAAGAGKTGGTGGATACRAGTTTTGTATAGAAATAGAGAAGAAT
TGAAACAAAW[T/A]AGGCCACARCAGCAAGATCAAAAACCCTGWTCAAT
GAGATAATCACCAAGCCTTTCCACA