CIR_Contig01674bb-Contig1:233 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig01674bb-Contig1:233
AliasContig1674bb-contig1:233
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceATCACTATAAGAGKTGGTGGATACRAGTTTTGTATAGAAATAGAGAAGAATTGAAACAAA
3' Flanking SequenceWAGGCCACARCAGCAAGATCAAAAACCCTGWTCAATGAGATAATCACCAAGCCTTTCCAC
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:104040597..104040717 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:119464612..119464734 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:57026322..57026442 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:154753107..154753227 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:24235941..24236061 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:76227409..76227529 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:104011043..104011163 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:106214280..106214400 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:104473525..104473645 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:102957216..102957336 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:104929526..104929646 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:108444173..108444293 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:106051640..106051760 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:111176979..111177099 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:106144222..106144342 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:107203267..107203387 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:113233198..113233320 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:117810688..117810810 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:56420002..56420122 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:41843391..41843511 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:40419927..40420047 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:59269402..59269522 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:39197733..39197853 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:30465800..30465920 -Gossypium gossypioides (D6) genome ISU_v1n/a
F13chromosomeF13:91596631..91596751 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig01674bb-Contig1:233 ID=CIR_Contig01674bb-Contig1:233; Name=CIR_Contig01674bb-Contig1:233; organism=Gossypium spp.; type=genetic_marker; length=125bp
ATCACTATAAGAGKTGGTGGATACRAGTTTTGTATAGAAATAGAGAAGAA
TTGAAACAAA[T/A]WAGGCCACARCAGCAAGATCAAAAACCCTGWTCAA
TGAGATAATCACCAAGCCTTTCCAC