CIR_Contig01674bb-Contig1:197 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig01674bb-Contig1:197
AliasContig1674bb-contig1:197
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGTAACTGGTAATACTATTATTCAACTGCACCCAACCATCACTATAAGAGKTGGTGGATAC
3' Flanking SequenceAGTTTTGTATAGAAATAGAGAAGAATTGAAACAAAWWAGGCCACARCAGCAAGATCAAAA
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:104040633..104040753 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:119464648..119464770 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:57026358..57026478 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:154753143..154753263 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:24235905..24236025 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:76227445..76227565 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:104011079..104011199 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:106214316..106214436 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:104473561..104473681 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:102957252..102957372 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:104929562..104929682 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:108444209..108444329 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:106051676..106051796 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:111177015..111177135 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:106144258..106144378 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:107203303..107203423 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:113233234..113233356 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:117810724..117810846 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:6011645..6011765 +Gossypium anomalum (B1) genome NSF_v1n/a
chr13chromosomechr13:41843427..41843547 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:40419963..40420083 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:59269438..59269558 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:39197769..39197889 -Gossypium aridum (D4) genome ISU_v1n/a
F13chromosomeF13:91596667..91596786 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig01674bb-Contig1:197 ID=CIR_Contig01674bb-Contig1:197; Name=CIR_Contig01674bb-Contig1:197; organism=Gossypium spp.; type=genetic_marker; length=125bp
GTAACTGGTAATACTATTATTCAACTGCACCCAACCATCACTATAAGAGK
TGGTGGATAC[A/G]AGTTTTGTATAGAAATAGAGAAGAATTGAAACAAA
WWAGGCCACARCAGCAAGATCAAAA