CIR_Contig10076bb-contig1:1053 (genetic_marker) Gossypium spp.

Marker Overview
NameCIR_Contig10076bb-contig1:1053
AliasContig10076bb-contig1:1053
dbSNP IDN/A
TypeSNP
SNP AllelesT/G
5' Flanking SequenceCACCATGGTGGAATGGGGTGGTGAAGTAGTGAACTCAAGGGCCAACGGCAAGCACACGTC
3' Flanking SequenceACKGAAATGGGCTCCGGTCACTTTGCTGAAGATGGGTTTGGAAAATCGAGCTATTTCCGR
SpeciesGossypium spp.
GermplasmGuazuncho-2
VH8-4602
Source TypecDNA
Publication[view all]
ContactLacape, Jean Marc
CommentData obtained from CIRAD, 2014
Contact
NameDetails
Lacape, Jean Marc
Description:Molecular breeding and germplasm enhancement
First name:Jean Marc
Last name:Lacape
Title:Researcher
Institution:CIRAD
Address:CIRAD, TA A-96/03, Avenue Agropolis, Montpellier, Cedex 5 34398
Country:France
Email:marc.lacape@cirad.fr
Phone:+33 467614471
Fax:+33 467615605
Keywords:Breeder
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:52572476..52572595 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:100322122..100322241 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:50027935..50028054 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:37869418..37869537 +Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:114029050..114029169 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:53782524..53782643 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:148409860..148409979 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:22241670..22241789 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:75542243..75542362 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:52777249..52777368 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:71505842..71505961 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:55792364..55792483 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:100035775..100035894 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:56759246..56759365 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:102382021..102382140 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:55939631..55939750 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:100520959..100521078 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:52643958..52644077 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:98981202..98981321 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:52275966..52276085 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:101269221..101269340 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:53576917..53577036 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:104658322..104658441 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:53335533..53335652 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:102223621..102223740 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:56595294..56595413 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:107130808..107130927 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:53235892..53236011 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:102349118..102349237 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:57019590..57019709 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:103243539..103243658 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:109083749..109083868 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:113759015..113759134 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:50019208..50019327 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:10036745..10036864 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:52946303..52946422 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:37655070..37655189 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:35971895..35972014 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:55807416..55807535 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:35071768..35071887 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:27324520..27324639 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:34250159..34250278 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:105208954..105209073 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr13chromosomeChr13:10498119..10498238 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
VH8-4602accession
Sequence
>CIR_Contig10076bb-contig1:1053 ID=CIR_Contig10076bb-contig1:1053; Name=CIR_Contig10076bb-contig1:1053; organism=Gossypium spp.; type=genetic_marker; length=125bp
CACCATGGTGGAATGGGGTGGTGAAGTAGTGAACTCAAGGGCCAACGGCA
AGCACACGTC[T/G]ACKGAAATGGGCTCCGGTCACTTTGCTGAAGATGG
GTTTGGAAAATCGAGCTATTTCCGR