mGhCIR0643 (genetic_marker) Gossypium hirsutum | Cottongen

Marker Overview

Marker Overview


Name	mGhCIR0643
Alias	mGhCIR643
Genbank ID	N/A
Type	SSR
Species	Gossypium hirsutum
Repeat Motif	(CAG)5
Primer 1	mGhCIR0643_F: CCATCAGTGCCTAGTCAGATA
Primer 2	mGhCIR0643_R: AGCATTTGAGAAGAACAGTTG
Product Length	183
Publication	[view all]
Comment	Data obtained from publication. 2014

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D10	chromosome	D10:36163058..36163240 .	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	CottonGen marker alignment to genome using primer sequences

Publications


Year	Publication
2012	Lacape JM, Claverie M, Vidal RO, Carazzolle MF, Guimarães Pereira GA, Ruiz M, Pré M, Llewellyn D, Al-Ghazi Y, Jacobs J, Dereeper A, Huguet S, Giband M, Lanaud C. Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. PloS one. 2012; 7(11):e48855.