mGhCIR0538 (genetic_marker) Gossypium hirsutum | Cottongen

Marker Overview

Marker Overview


Name	mGhCIR0538
Alias	mGhCIR538
Genbank ID	N/A
Type	SSR
Species	Gossypium hirsutum
Repeat Motif	(AAT)5
Primer 1	mGhCIR0538_F: TCTCTGTGTTGGGAATATCAG
Primer 2	mGhCIR0538_R: GTACCCCTAGCAGAGAGAGAA
Product Length	127
Publication	[view all]
Comment	Data obtained from publication. 2014

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A13	chromosome	A13:13125523..13125646 .	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	CottonGen marker alignment to genome using primer sequences

Publications


Year	Publication
2012	Lacape JM, Claverie M, Vidal RO, Carazzolle MF, Guimarães Pereira GA, Ruiz M, Pré M, Llewellyn D, Al-Ghazi Y, Jacobs J, Dereeper A, Huguet S, Giband M, Lanaud C. Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. PloS one. 2012; 7(11):e48855.