UCD_Gh_M_014610, UCD_Gh_M_014610 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_014610
AliasGh_M_014610
TM1_Sing_EST.DT550572_407
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceGTACCCTTGAAAGTAATTTTGGTTTATCAAGCATTGATCTTTTCCTATGTTTTAATCAAA GTTTAAACGTTCTAGTTCATGGTTTTATTTTGATTAAGCT
3' Flanking SequenceGTACTTTTATATTGAACGAGCATACTGATATGTCTTTTTCTAGTTTTCCGGCTTTTAGGA TCGGCAAGTAGGATGTTTATACTTTTCGTTCTTTCCTTTT
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:106442449..106442649 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4049772..4049971 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold4033.1supercontigscaffold4033.1:19083..19283 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:97411092..97411292 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:111254748..111254948 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:111718455..111718655 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:111363873..111364073 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:106719898..106720098 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:108103807..108104007 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:107405624..107405824 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:115122511..115122711 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:109719135..109719335 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:114539689..114539889 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124276205..124276405 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120210014..120210213 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_014610 ID=UCD_Gh_M_014610; Name=UCD_Gh_M_014610; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GTACCCTTGAAAGTAATTTTGGTTTATCAAGCATTGATCTTTTCCTATGT
TTTAATCAAAGTTTAAACGTTCTAGTTCATGGTTTTATTTTGATTAAGCT
[C/T]GTACTTTTATATTGAACGAGCATACTGATATGTCTTTTTCTAGTT
TTCCGGCTTTTAGGATCGGCAAGTAGGATGTTTATACTTTTCGTTCTTTC
CTTTT