UCD_Gh_M_014609, UCD_Gh_M_014609 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_014609
AliasGh_M_014609
TM1_Sing_EST.DT550572_364
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGGGATGTTTATATTCCTAAAGACTACTACACAGGGTTTGTATTGTACCCTTGAAAGTAAT TTTGGTTTATCAAGCATTGATCTTTTCCTATGTTTTAATC
3' Flanking SequenceAAGTTTAAACGTTCTAGTTCATGGTTTTATTTTGATTAAGCTCGTACTTTTATATTGAAC GAGCATACTGATATGTCTTTTTCTAGTTTTCCGGCTTTTA
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:106442406..106442606 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold4033.1supercontigscaffold4033.1:19040..19240 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:97411049..97411249 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:111254705..111254905 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:111718412..111718612 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:111363830..111364030 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:106719855..106720055 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:108103764..108103964 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:107405581..107405781 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:115122468..115122668 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:109719092..109719292 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:114539646..114539846 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124276162..124276362 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
B_10chromosomeB_10:4486219..4486417 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:46195971..46196170 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:44897875..44898074 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_014609 ID=UCD_Gh_M_014609; Name=UCD_Gh_M_014609; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GGGATGTTTATATTCCTAAAGACTACTACACAGGGTTTGTATTGTACCCT
TGAAAGTAATTTTGGTTTATCAAGCATTGATCTTTTCCTATGTTTTAATC
[A/G]AAGTTTAAACGTTCTAGTTCATGGTTTTATTTTGATTAAGCTCGT
ACTTTTATATTGAACGAGCATACTGATATGTCTTTTTCTAGTTTTCCGGC
TTTTA