UCD_Gh_M_014604, UCD_Gh_M_014604 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_014604
AliasGh_M_014604
TM1_Sing_EST.DT550617_313
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceAATGAAAAGAACGTCTATTGCTTGGACTGTTGTATTAGTATCTGCCCTCACTGCTTGTCC CCTCACAGCTCTCACAGGCTCCTACAGGTTCTCCCTTCCA
3' Flanking SequenceAATTCACCTTATAACATTGATTCTTTTTTCCTTGTTGTGCATGATTTCACGTTTTTCCTA TGTCATGTTTTAGATAAGAAGGTATGTCTATCACGATGTT
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018208.1chromosomeCM018208.1:34720154..34720354 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:35039789..35039989 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold918.1supercontigscaffold918.1:539271..539471 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:34658001..34658201 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:35532727..35532927 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:34774400..34774600 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:35915511..35915711 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:35237686..35237886 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:34767525..34767725 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:34631663..34631863 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:35137366..35137566 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:35463406..35463606 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:35011730..35011930 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:36228954..36229154 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:36833521..36833721 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:37593408..37593608 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_07chromosomeB_07:35041099..35041299 +Gossypium anomalum (B1) genome NSF_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_014604 ID=UCD_Gh_M_014604; Name=UCD_Gh_M_014604; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
AATGAAAAGAACGTCTATTGCTTGGACTGTTGTATTAGTATCTGCCCTCA
CTGCTTGTCCCCTCACAGCTCTCACAGGCTCCTACAGGTTCTCCCTTCCA
[A/G]AATTCACCTTATAACATTGATTCTTTTTTCCTTGTTGTGCATGAT
TTCACGTTTTTCCTATGTCATGTTTTAGATAAGAAGGTATGTCTATCACG
ATGTT