UCD_Gh_M_014304, UCD_Gh_M_014304 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_014304
AliasGh_M_014304
TM1_Sing_EST.DT562571_561
dbSNP IDN/A
TypeSNP
SNP AllelesC/A
5' Flanking SequenceCTCTCTAAAGCTTTCTCTTTCACCTGGGTAAATGTTTTACTGTTTTCTGTGCTCAGAAAA TGGTCATTGTTTAGAATTGAATGATATCTATTGTGTCCGG
3' Flanking SequenceTAACTAATTTCGATCAATTTAGCTATTTAGTCCTAAAACATCTGGTAATAATGCCTCTAA TGAATGGAGGCCTCACTTATGTTTCTTTGACTCCATTTTT
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:44618138..44618338 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:46792937..46793137 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:14745384..14745584 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1033_A05supercontigscaffold1033_A05:58329..58529 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:44836255..44836455 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:44574664..44574864 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:46146122..46146322 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:45197111..45197311 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:43304106..43304306 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:44819947..44820147 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:45057386..45057586 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:46657669..46657869 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:44924070..44924270 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:46662389..46662589 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:47893120..47893320 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_014304 ID=UCD_Gh_M_014304; Name=UCD_Gh_M_014304; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CTCTCTAAAGCTTTCTCTTTCACCTGGGTAAATGTTTTACTGTTTTCTGT
GCTCAGAAAATGGTCATTGTTTAGAATTGAATGATATCTATTGTGTCCGG
[A/C]TAACTAATTTCGATCAATTTAGCTATTTAGTCCTAAAACATCTGG
TAATAATGCCTCTAATGAATGGAGGCCTCACTTATGTTTCTTTGACTCCA
TTTTT