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Marker Overview
| Name | UCD_Gh_M_003939 |
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| Alias | Gh_M_003939
Tm1_Mira454_Contig_17140_153
Gh_M_003939_Class_I
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| dbSNP ID | N/A |
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| SNP Array ID | | TAMU_CottonSNP63K: | i00413Gh |
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| Type | SNP |
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| SNP Alleles | C/A |
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| 5' Flanking Sequence | GCAGTCATACCCCCTCTACCTACCCTTGACTTGTCTCCAAAGGTAATCTCACCCTGATGC
TTTTCTTTAACATATGTGTGGATTAGCTTTGATTTTGGAT |
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| 3' Flanking Sequence | GCTTGGAGGGCCACTGTAAAGACCCTCARCATCACTCAATAAAACAAGAAGATCAGCTTT
TAGTTCCAGAGCGAGTAGAGCTGCTAAACTGTCATTGTCC |
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| Species | Gossypium hirsutum |
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| Germplasm | Acala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
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| Source Type | RNA |
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| Publication | [view all] |
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| Contact | Ashrafi, Hamid
Stelly, David M.
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| Comment | class_I: no only SNPs derived from contigs with no known homeo-SNP positions in the contig within our data set |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2015 | Ashrafi H, Hulse-Kemp AM, Wang F, Yang SS, Guan X, Jones DC, Matvienko M, Mockaitis K, Chen ZJ, Stelly DM, Van Deynze A. A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery. 2015; 8(2):1-14. |
| 2015 | Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Kumar Singh S, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM. Development of a 63K SNP Array for Cotton and High-Density Mapping of Intra- and Inter-Specific Populations of Gossypium spp. G3 (Bethesda, Md.). 2015 Apr 22. |
Sequence
>UCD_Gh_M_003939 ID=UCD_Gh_M_003939; Name=UCD_Gh_M_003939; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
GCAGTCATACCCCCTCTACCTACCCTTGACTTGTCTCCAAAGGTAATCTC
ACCCTGATGCTTTTCTTTAACATATGTGTGGATTAGCTTTGATTTTGGAT
MGCTTGGAGGGCCACTGTAAAGACCCTCARCATCACTCAATAAAACAAGA
AGATCAGCTTTTAGTTCCAGAGCGAGTAGAGCTGCTAAACTGTCATTGTC
C
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