UCD_Gh_M_000612, UCD_Gh_M_000612 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000612
AliasGh_M_000612
Tm1_Mira454_Contig_2771_1172
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceGTGCTTGCAAGAGGGTCACCCACTGTGTTCCCTGAGCAATCTGGAAATCAATAATGTGGA TGCGATCTTCGGTTCTGCATGCTTCAGCAATGGCCCCATT
3' Flanking SequenceGCAGCCATGTATCCAAACTTCAAGTACGGGCAAATTTCATAAAGGGTATGCATGTATGTG AGTAAGTCCTTGCCTTCCGGCTCTTGGCAACGAAGGGCTC
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:3752793..3752993 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:92915511..92915711 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2595.1supercontigscaffold2595.1:164957..165157 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:3725899..3726099 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:4247692..4247892 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:3544096..3544296 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:3679313..3679513 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:3407352..3407552 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:3989098..3989298 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:3784836..3785036 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:3523486..3523686 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:4359455..4359655 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:3837704..3837904 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:3690006..3690206 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:89987000..89987200 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:93615887..93616087 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000612 ID=UCD_Gh_M_000612; Name=UCD_Gh_M_000612; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GTGCTTGCAAGAGGGTCACCCACTGTGTTCCCTGAGCAATCTGGAAATCA
ATAATGTGGATGCGATCTTCGGTTCTGCATGCTTCAGCAATGGCCCCATT
[A/G]GCAGCCATGTATCCAAACTTCAAGTACGGGCAAATTTCATAAAGG
GTATGCATGTATGTGAGTAAGTCCTTGCCTTCCGGCTCTTGGCAACGAAG
GGCTC