UCD_Gh_M_000582, UCD_Gh_M_000582 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000582
AliasGh_M_000582
Tm1_Mira454_Contig_2662_132
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceGAATTCGAAAGTGGCCAAAAACAAACACATGCAATTACCAACTAGATAAATACTTTACCT CTTTGTTTCTTGRCCTAAACAAACTGCCTTGACTTAAAAC
3' Flanking SequenceGACTAACGGCAAGCACGATATCAAACTTACTATGAAAATCATTGAGATGAAATGGTTTCA CTTCGTTTATCTGCCGGATCCTTCACTGCATCAGGAAGGC
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:65205255..65205456 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:83330456..83330657 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr11chromosomeDt_chr11:45063952..45064153 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:57488105..57488306 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:69006098..69006299 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:70582330..70582531 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:68767744..68767945 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:64419647..64419848 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:65571493..65571694 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:67085830..67086031 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:66393603..66393804 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:71903615..71903816 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:68093958..68094159 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:71830806..71831007 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:34406865..34407066 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:44575112..44575313 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000582 ID=UCD_Gh_M_000582; Name=UCD_Gh_M_000582; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
GAATTCGAAAGTGGCCAAAAACAAACACATGCAATTACCAACTAGATAAA
TACTTTACCTCTTTGTTTCTTGRCCTAAACAAACTGCCTTGACTTAAAAC
YGACTAACGGCAAGCACGATATCAAACTTACTATGAAAATCATTGAGATG
AAATGGTTTCACTTCGTTTATCTGCCGGATCCTTCACTGCATCAGGAAGG
C