UCD_Gh_M_000530, UCD_Gh_M_000530 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000530
AliasGh_M_000530
Tm1_Mira454_Contig_2298_1222
dbSNP IDN/A
TypeSNP
SNP AllelesT/G
5' Flanking SequenceCATTGCTAGCAAACGATACCACAAACCAAACTTATTGCACTGCAAAGGAAGGGGCTGATC CGAAGATGTTGCAAGCTGCTTTAGATTGGGCGTGTGGACC
3' Flanking SequenceGGAAAAGTTGATTGTTCACCCTTGTTGCAAGGAAAACCTTGTTATGAGCCAGATAATGTG ATTGCACACGCAACTTACGCATTCGACACTTACTATCACA
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:43910494..43910694 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:40044333..40044533 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:12805183..12805383 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:75061295..75061495 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:42657546..42657746 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:46931331..46931531 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:46257195..46257395 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:46276790..46276990 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:42790334..42790534 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:45968528..45968728 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:45226369..45226569 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:44395089..44395289 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:45330504..45330704 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:44869754..44869954 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:46799411..46799611 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:12028419..12028619 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr01_6500579chromosomechr01_6500579:4851..5051 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:28879103..28879303 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01_5994286chromosomeChr01_5994286:3343..3543 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:28983704..28983904 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000530 ID=UCD_Gh_M_000530; Name=UCD_Gh_M_000530; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CATTGCTAGCAAACGATACCACAAACCAAACTTATTGCACTGCAAAGGAA
GGGGCTGATCCGAAGATGTTGCAAGCTGCTTTAGATTGGGCGTGTGGACC
[G/T]GGAAAAGTTGATTGTTCACCCTTGTTGCAAGGAAAACCTTGTTAT
GAGCCAGATAATGTGATTGCACACGCAACTTACGCATTCGACACTTACTA
TCACA