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Marker Overview
| Name | UCD_Gh_M_000516 |
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| Alias | Gh_M_000516
Tm1_Mira454_Contig_2244_1666
Gh_M_000516_Class_I
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| dbSNP ID | N/A |
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| SNP Array ID | | TAMU_CottonSNP63K: | i00184Gh |
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| Type | SNP |
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| SNP Alleles | C/T |
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| 5' Flanking Sequence | GTACTAAGTGCTTTAGAAAAGTTTTTGTCATTAGGTTTCGATGAGACTTCTTTCGAAGAG
ACTCCTACTTTCTTAGAGGATGTTGATCCACCCTTCTGCA |
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| 3' Flanking Sequence | GACTTTCGAGGCATCGGATGAGTGGGATTTCAAATTGGGTGAAGATCTGAGCTTTGCAAT
TGATGTCTTTTTTTCCTCCAACAGTACTTCATCATTCCTA |
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| Species | Gossypium hirsutum |
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| Germplasm | Acala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
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| Source Type | RNA |
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| Publication | [view all] |
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| Contact | Ashrafi, Hamid
Stelly, David M.
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| Comment | class_I: no only SNPs derived from contigs with no known homeo-SNP positions in the contig within our data set |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2015 | Ashrafi H, Hulse-Kemp AM, Wang F, Yang SS, Guan X, Jones DC, Matvienko M, Mockaitis K, Chen ZJ, Stelly DM, Van Deynze A. A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery. 2015; 8(2):1-14. |
| 2015 | Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Kumar Singh S, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM. Development of a 63K SNP Array for Cotton and High-Density Mapping of Intra- and Inter-Specific Populations of Gossypium spp. G3 (Bethesda, Md.). 2015 Apr 22. |
Sequence
>UCD_Gh_M_000516 ID=UCD_Gh_M_000516; Name=UCD_Gh_M_000516; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GTACTAAGTGCTTTAGAAAAGTTTTTGTCATTAGGTTTCGATGAGACTTC
TTTCGAAGAGACTCCTACTTTCTTAGAGGATGTTGATCCACCCTTCTGCA
[C/T]GACTTTCGAGGCATCGGATGAGTGGGATTTCAAATTGGGTGAAGA
TCTGAGCTTTGCAATTGATGTCTTTTTTTCCTCCAACAGTACTTCATCAT
TCCTA
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