UCD_Gh_M_000479, UCD_Gh_M_000479 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000479
AliasGh_M_000479
Tm1_Mira454_Contig_2114_1054
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCGGTGGTGATTCATTGAATGCTTTGCAAAGGGTTCTTCTTTGGACATTTTGATTGTTGAG GTAAACTAATGCAGTCCCTAATGATGATGATGATGATGAC
3' Flanking SequenceAACAGGAAGAAGATGTTGAAGGGGAAATAGATGATGGGAAGAAGGAATTAGCAGTTGAGA GAAATGCAGTTGCCTATTTTCTTTTTTTAATTTTTTTTCT
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018208.1chromosomeCM018208.1:4693063..4693260 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:4767341..4767539 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold787.1supercontigscaffold787.1:534955..535152 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:3859697..3859893 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:4720543..4720740 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:4402669..4402866 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:4678530..4678727 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:4708533..4708729 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:4652803..4653000 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:4553158..4553355 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:4493870..4494069 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:4688760..4688957 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:4651469..4651666 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:4691916..4692113 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:4784170..4784368 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:4770649..4770847 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000479 ID=UCD_Gh_M_000479; Name=UCD_Gh_M_000479; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CGGTGGTGATTCATTGAATGCTTTGCAAAGGGTTCTTCTTTGGACATTTT
GATTGTTGAGGTAAACTAATGCAGTCCCTAATGATGATGATGATGATGAC
[A/G]AACAGGAAGAAGATGTTGAAGGGGAAATAGATGATGGGAAGAAGG
AATTAGCAGTTGAGAGAAATGCAGTTGCCTATTTTCTTTTTTTAATTTTT
TTTCT