UCD_Gh_M_000359, UCD_Gh_M_000359 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000359
AliasGh_M_000359
Tm1_Mira454_Contig_1504_1332
dbSNP IDN/A
TypeSNP
SNP AllelesC/A
5' Flanking SequenceTTCTCTTGGCGAGCACCTCGGTCTCGGAGCAATAAAAAAGGCAGACTTTTTTGGCGGGTT TAACGGCGGAACCGGCGACGGAGGCGGCCATTGATATCGA
3' Flanking SequenceGGAGATGAATTCCGGATCAAATGAACCGATTCTTTTCCGGAGAGGAATTCGACGCTCCAA TTCGAATGCTGATTTTCAAAACTCTTGATCTGAGACCGAA
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:53115495..53115695 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_04chromosomeD10_04:51462507..51462707 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr12chromosomeDt_chr12:3192449..3192649 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:50261077..50261277 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:55036700..55036900 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:55650767..55650967 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:54880256..54880456 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:52943910..52944110 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:51212655..51212855 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:56094119..56094319 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:53189302..53189502 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:56058539..56058739 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:53205906..53206106 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:56805572..56805772 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:53153260..53153460 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000359 ID=UCD_Gh_M_000359; Name=UCD_Gh_M_000359; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
TTCTCTTGGCGAGCACCTCGGTCTCGGAGCAATAAAAAAGGCAGACTTTT
TTGGCGGGTTTAACGGCGGAACCGGCGACGGAGGCGGCCATTGATATCGA
[A/C]GGAGATGAATTCCGGATCAAATGAACCGATTCTTTTCCGGAGAGG
AATTCGACGCTCCAATTCGAATGCTGATTTTCAAAACTCTTGATCTGAGA
CCGAA