UCD_Gh_M_000358, UCD_Gh_M_000358 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000358
AliasGh_M_000358
Tm1_Mira454_Contig_1504_1289
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceCAATTTATGCTGCGGAGCTCAATTGCATCTGATTCAGCAGCGATTCTCTTGGCGAGCACC TCGGTCTCGGAGCAATAAAAAAGGCAGACTTTTTTGGCGG
3' Flanking SequenceTTTAACGGCGGAACCGGCGACGGAGGCGGCCATTGATATCGACGGAGATGAATTCCGGAT CAAATGAACCGATTCTTTTCCGGAGAGGAATTCGACGCTC
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:53115452..53115652 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:1166817..1167017 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:51462464..51462664 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr12chromosomeDt_chr12:3192492..3192692 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:50261034..50261234 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:55036657..55036857 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:55650724..55650924 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:54880213..54880413 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:52943867..52944067 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:51212612..51212812 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:56094076..56094276 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017652.1chromosomeCM017652.1:56058496..56058696 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:53205863..53206063 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:56805529..56805729 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:1172763..1172963 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:53153217..53153417 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:27153252..27153452 +Gossypium aridum (D4) genome ISU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000358 ID=UCD_Gh_M_000358; Name=UCD_Gh_M_000358; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CAATTTATGCTGCGGAGCTCAATTGCATCTGATTCAGCAGCGATTCTCTT
GGCGAGCACCTCGGTCTCGGAGCAATAAAAAAGGCAGACTTTTTTGGCGG
[A/G]TTTAACGGCGGAACCGGCGACGGAGGCGGCCATTGATATCGACGG
AGATGAATTCCGGATCAAATGAACCGATTCTTTTCCGGAGAGGAATTCGA
CGCTC